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Installation procedure to Ubuntu18.04(cmake)

Appendix : Example of installation procedure to Ubuntu18.04(cmake)

We will explain how to install this software and how to build external libraries required this software on Ubuntu18.04.

More information for building each libraries, refer to their installation manuals.

Preparation

At first, install the basic build toolchains and libraries as follows.

sudo apt install build-essential gfortran cmake openmpi-bin libopenmpi-dev

Please check compilers and compiler wrappers for MPI works propery.

$ which gcc g++ gfortran mpicc mpic++ mpifort
/usr/bin/gcc
/usr/bin/g++
/usr/bin/gfortran
/usr/bin/mpicc
/usr/bin/mpic++
/usr/bin/mpifort

Installing libraries

Compile and install required libraries this software. Working directory is $HOME/work, destination directory for install is $HOME/local.

And add $HOME/local/bin to PATH environment variable as follows.

cd $HOME
mkdir work
mkdir -p local/bin local/lib local/include
export PATH=$HOME/local/bin:$PATH

Downloads

Downloads the following software and save it to working directory $HOME/work.

Software Link
REVOCAP_Refiner-1.1.04.tar.gz https://www.frontistr.com/download/
FrontISTR_V50.tar.gz https://www.frontistr.com/download/
OpenBLAS-0.2.20.tar.gz https://www.openblas.net/
metis-5.1.0.tar.gz https://gitlab.com/FrontISTR-Commons/METIS
https://gitlab.com/FrontISTR-Commons/GKlib
scalapack-2.0.2.tgz https://www.netlib.org/scalapack/
MUMPS_5.1.2.tar.gz https://mumps.enseeiht.fr/
trilinos-12.14.1-Source.tar.bz2 https://trilinos.org/download/

Compiling REVOCAP_Refiner

cd $HOME/work
tar xvf REVOCAP_Refiner-1.1.04.tar.gz
cd REVOCAP_Refiner-1.1.04
make
cp lib/x86_64-linux/libRcapRefiner.a $HOME/local/lib
cp Refiner/rcapRefiner.h $HOME/local/include

Compiling OpenBLAS

cd $HOME/work
tar xvf OpenBLAS-0.2.20.tar.gz
make BINARY=64 NO_SHARED=1 USE_OPENMP=1
make PREFIX=$HOME/local install

Compiling METIS

cd $HOME/work
tar xvf metis-5.1.0.tar.gz
cd metis-5.1.0
make config prefix=$HOME/local cc=gcc openmp=1
make
make install

Compiling ScaLAPACK

$ cd $HOME/work
$ tar xvf scalapack-2.0.2.tgz
$ cd scalapack-2.0.2
$ mkdir build
$ cmake -DCMAKE_INSTALL_PREFIX=$HOME/local \
        -DCMAKE_EXE_LINKER_FLAGS="-fopenmp" \
        -DBLAS_LIBRARIES=$HOME/local/lib/libopenblas.a \
        -DLAPACK_LIBRARIES=$HOME/local/lib/libopenblas.a \
        ..
$ make
$ make install

Compiling MUMPS

cd $HOME/work
tar xvf MUMPS_5.1.2.tar.gz
cd MUMPS_5.1.2
cp Make.inc/Makefile.inc.generic Makefile.inc

Change the following parts of copied Makefile.inc.

$ vi Makefile.inc
$ cp Make.inc/Makefile.inc.generic Makefile.inc
$ vi Makefile.inc
LMETISDIR = $(HOME)/local
IMETIS    = -I$(LMETISDIR)/include
LMETIS    = -L$(LMETISDIR)/lib -lmetis

ORDERINGSF  = -Dmetis -Dpord

CC      = mpicc -fopenmp
FC      = mpifort -fopenmp
FL      = mpifort -fopenmp

LAPACK = -L$(HOME)/local/lib -lopenblas

SCALAP  = -L$(HOME)/local/lib -lscalapack

INCPAR =

LIBPAR  = $(SCALAP)

LIBBLAS = -L$(HOME)/local/lib -lopenblas

Then execute make.

make
cp lib/*.a $HOME/local/lib
cp include/*.h $HOME/local/include

Compiling Trilinos ML

$ cd $HOME/work
$ tar xvf trilinos-12.14.1-Source.tar.gz
$ cd trilinos-12.14.1-Source
$ mkdir build
$ cmake -DCMAKE_INSTALL_PREFIX=$HOME/local \
        -DCMAKE_C_COMPILER=mpicc \
        -DCMAKE_CXX_COMPILER=mpic++ \
        -DCMAKE_Fortran_COMPILER=mpifort \
        -DTPL_ENABLE_MPI=ON \
        -DTPL_ENABLE_LAPACK=ON \
        -DTPL_ENABLE_SCALAPACK=ON \
        -DTPL_ENABLE_METIS=ON \
        -DTPL_ENABLE_MUMPS=ON \
        -DTrilinos_ENABLE_ML=ON \
        -DTrilinos_ENABLE_Zoltan=ON \
        -DTrilinos_ENABLE_OpenMP=ON \
        -DTrilinos_ENABLE_Amesos=ON \
        -DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES=OFF \
        -DBLAS_LIBRARY_DIRS=$HOME/local/lib \
        -DLAPACK_LIBRARY_DIRS=$HOME/local/lib" \
        -DSCALAPACK_LIBRARY_DIRS=$HOME/local/lib" \
        -DBLAS_LIBRARY_NAMES="openblas" \
        -DLAPACK_LIBRARY_NAMES="openblas" \
        -DSCALAPACK_LIBRARY_NAMES="scalapack" \
        ..
$ make
$ make install

Compiling FrontISTR

Finishing compiling above libraeies, compile FrontISTR.

$ cd $HOME/work/FrontISTR
$ mkdir build
$ cd build
$ cmake -DCMAKE_INSTALL_PREFIX=$HOME/FrontISTR \
        -DBLAS_LIBRARIES=$HOME/local/lib/libopenblas.a \
        -DLAPACK_LIBRARIES=$HOME/local/lib/libopenblas.a \
        ..

Executing make

make

When execute make simultaneously, specify option -j.

make -j4

Reduce compile time when increase the number of simultaneous.

Executing make install

make install

FrontISTR will be installed to $(HOME)/FrontISTR/bin.

Testing FrontISTR

Run sample case in the tutorial directory and check running of FrontISTR.

$ cd $HOME/work/FrontISTR/tutorial
$ cd 01_elastic_hinge
$ $HOME/FrontISTR/bin/fistr1
 Step control not defined! Using default step=1
 fstr_setup: OK
 Start visualize PSF 1 at timestep 0

 loading step=    1
 sub_step= 1,   current_time=  0.0000E+00, time_inc=  0.1000E+01
 loading_factor=    0.0000000   1.0000000
### 3x3 BLOCK CG, SSOR, 1
      1    1.903375E+00
      2    1.974378E+00
      3    2.534627E+00
      4    3.004045E+00
      5    3.202633E+00
      6    3.203864E+00
...
...

When finished analysis, displayed message as follows.

...
...
   2966    1.143085E-08
   2967    1.078272E-08
   2968    1.004759E-08
   2969    9.372882E-09
### Relative residual = 9.39169E-09

### summary of linear solver
      2969 iterations      9.391687E-09
    set-up time      :     4.108060E-01
    solver time      :     6.506822E+01
    solver/comm time :     4.342469E-01
    solver/matvec    :     1.923199E+01
    solver/precond   :     2.688405E+01
    solver/1 iter    :     2.191587E-02
    work ratio (%)   :     9.933263E+01

 Start visualize PSF 1 at timestep 1
### FSTR_SOLVE_NLGEOM FINISHED!

 ====================================
    TOTAL TIME (sec) :     74.93
           pre (sec) :      1.86
         solve (sec) :     73.07
 ====================================
 FrontISTR Completed !!